オープンソースのバイオインフォマティックスソフトウェアの一覧

オープンソースのバイオインフォマティックスのソフトウェア の一覧。

名称	説明	プラットフォーム	ライセンス	開発元
.NET Bio	A language-neutral bioinformatics toolkit built using the Microsoft 4.0 .NET Framework to help developers, researchers, and scientists.	.NET Framework	Apache License	Collaborative project
AMPHORA	Metagenomics analysis software	Linux	GNU General Public License	Developer
Anduril	Component-based workflow framework for data analysis	Linux, Mac OS X, Windows	GPL	University of Helsinki
AutoDock	suite of automated docking tools	Platform	GNU GPL	Developer
Biochemical Algorithms Library (BALL)	C++ library and framework for molecular modeling and visualization designed for rapid prototyping	Linux, Mac OS X, Windows	LGPL	BALL project team
Bioclipse	Visual platform for chemo- and bioinformatics based on the Eclipse Rich Client Platform (RCP).	Platform	Eclipse Public License	The Bioclipse Project
Bioconductor	R (programming language) language toolkit	Linux, Mac OS X, Windows	Artistic License 2.0	Fred Hutchinson Cancer Research Center
BioJava	Java (programming language)	Linux, Mac OS X, Windows	LGPL v2.1	Open Bioinformatics Foundation
BioJS	Javascript	Web	Apache License	-
BioMOBY	registry of web services	Web	Artistic License	Open Bioinformatics Foundation
BioPerl	Perl language toolkit	Cross-platform	Artistic License & GPL	Open Bioinformatics Foundation
BioPHP	PHP language toolkit	Platform	GPL v2	Open Bioinformatics Foundation
Biopython	Python language toolkit	Cross-platform	Biopython License	Open Bioinformatics Foundation
BioRuby	Ruby language toolkit	Platform	GNU GPL v2 or Ruby license	Open Bioinformatics Foundation
EMBOSS	Suite of packages for sequencing, searching, etc.	Platform	General Public Licence (GPL) and Library GPL	Collaborative project
Galaxy	Scientific workflow and data integration system	Unix-like	Academic Free License	Penn State and Emory University
GenePattern	Scientific workflow system that provides access to more than 150 genomic analysis tools	Unix-like (public server); Linux, Mac OS X, Windows	MIT license	Broad Institute
GeWorkbench	Genomic data integration platform	Linux, Mac OS X, Windows	License	Columbia University
GMOD	Toolkit for addressing many common challenges at biological databases.	Unix-like (server), Web browser (client)	Varies depending on tool	Collaborative project
GenGIS	Application that allows users to combine digital map data with information about biological sequences collected from the environment.	Windows, Mac OS X	GPL	Collaborative project
GenomeSpace	Centralized web application that provides data format transformations and facilitates connections with other bioinformatics tools	Web browser	LGPL	Broad Institute, Collaborative project
GENtle	An equivalent to the proprietary Vector NTI, a tool to analyze and edit DNA sequence files	Platform	GPL	Magnus Manske
Integrated Genome Browser	Java-based desktop genome browser	Linux, Mac OS X, Windows	CPL 1.0	GenoViz
InterMine	Extensive data warehouse system for the analysis and integration of biological datasets	Cross-platform	LGPL	University of Cambridge
LabKey Server	Open-source software platform that allows organizations to integrate, analyze and share complex biomedical data	Linux, Mac OS X, Windows	Apache License	LabKey Software Foundation
mothur	Software for analysis of the 16S rRNA gene	Linux, Mac OS X, Windows	The University of Michigan
PathVisio	a desktop software for drawing, analysis and visualization of biological pathways	Linux, Mac OS X, Windows	Apache 2.0 License	Maastricht University
Orange	a component-based data mining and machine learning software suite, featuring a visual programming front-end for exploratory data analysis and interactive visualization, and Python bindings and libraries for scripting	Linux, Mac OS X, Windows	GPL	University of Ljubljana
Staden Package	Sequence assembly, editing and analysis, primarily consisting of gap4, gap5 and spin.	Linux, Mac OS X, Windows	BSD	Wellcome Trust Sanger Institute / Medical Research Council
Taverna workbench	Tool for designing and executing workflows	Linux, Mac OS X, Windows	LGPL	myGrid
UGENE	integrated bioinformatics tools	Linux, Mac OS X, Windows	GPL2	Unipro
Unipept	Metaproteomics biodiversity analysis	Web browser	MIT License	Ghent University

外部リンク

Free Biology Software - Free Software Directory (フリーソフトウェア財団)

関連項目

外部リンク